it started working so commit it
This commit is contained in:
7
.gitignore
vendored
Normal file
7
.gitignore
vendored
Normal file
@@ -0,0 +1,7 @@
|
|||||||
|
.*.sw?
|
||||||
|
DS_Store
|
||||||
|
library.c
|
||||||
|
library.h
|
||||||
|
run
|
||||||
|
compile_commands.json
|
||||||
|
build/
|
||||||
19
CMakeLists.txt
Normal file
19
CMakeLists.txt
Normal file
@@ -0,0 +1,19 @@
|
|||||||
|
cmake_minimum_required(VERSION 3.5)
|
||||||
|
project(fedavg_mpi)
|
||||||
|
|
||||||
|
find_package(MPI REQUIRED)
|
||||||
|
find_package(Python3 COMPONENTS Development NumPy)
|
||||||
|
|
||||||
|
add_executable(${PROJECT_NAME} main.c library.c)
|
||||||
|
|
||||||
|
target_include_directories(${PROJECT_NAME} PRIVATE ${Python3_INCLUDE_DIRS})
|
||||||
|
target_include_directories(${PROJECT_NAME} PRIVATE ${Python3_NumPy_INCLUDE_DIRS})
|
||||||
|
target_include_directories(${PROJECT_NAME} PRIVATE ${CMAKE_CURRENT_SOURCE_DIR})
|
||||||
|
|
||||||
|
target_link_libraries(${PROJECT_NAME} ${Python3_LIBRARIES})
|
||||||
|
target_link_libraries(${PROJECT_NAME} ${MPI_C_LIBRARIES})
|
||||||
|
|
||||||
|
target_compile_options(${PROJECT_NAME} PRIVATE -Wall -g -std=c99)
|
||||||
|
add_compile_definitions(NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION)
|
||||||
|
|
||||||
|
set(CMAKE_EXPORT_COMPILE_COMMANDS on)
|
||||||
72
library.pyx
Normal file
72
library.pyx
Normal file
@@ -0,0 +1,72 @@
|
|||||||
|
cimport numpy as np
|
||||||
|
import numpy as np
|
||||||
|
import mynet as mn
|
||||||
|
|
||||||
|
|
||||||
|
ctr = []
|
||||||
|
X_train, y_train, X_test, y_test = mn.load_mnist()
|
||||||
|
|
||||||
|
|
||||||
|
cdef public char * greeting():
|
||||||
|
return f'The value is {3**3**3}'.encode('utf-8')
|
||||||
|
|
||||||
|
|
||||||
|
cdef public void debug_print(object o):
|
||||||
|
print(o.flags)
|
||||||
|
# print(o)
|
||||||
|
|
||||||
|
|
||||||
|
cdef public np.ndarray[np.float32_t, ndim=2, mode='c'] dot(
|
||||||
|
np.ndarray[np.float32_t, ndim=2, mode='c'] x,
|
||||||
|
np.ndarray[np.float32_t, ndim=2, mode='c'] y
|
||||||
|
):
|
||||||
|
return x @ y
|
||||||
|
|
||||||
|
|
||||||
|
cdef public np.ndarray[np.float32_t, ndim=2, mode='c'] predict(
|
||||||
|
object net,
|
||||||
|
np.ndarray[np.float32_t, ndim=2, mode='c'] X
|
||||||
|
):
|
||||||
|
try:
|
||||||
|
return net(X)
|
||||||
|
except Exception as e:
|
||||||
|
print(e)
|
||||||
|
|
||||||
|
|
||||||
|
cdef public object create_network():
|
||||||
|
return mn.Network((784, 10), mn.relu, mn.sigmoid, mn.bin_x_entropy)
|
||||||
|
|
||||||
|
|
||||||
|
cdef public object combo_net(list nets):
|
||||||
|
return mn.combo_net(nets)
|
||||||
|
|
||||||
|
|
||||||
|
cdef public object make_like(object neta, object netb):
|
||||||
|
netb.be_like(neta)
|
||||||
|
|
||||||
|
|
||||||
|
cdef public void step_net(
|
||||||
|
object net,
|
||||||
|
np.ndarray[np.float32_t, ndim=2, mode='c'] batch
|
||||||
|
):
|
||||||
|
opt = mn.SGDOptimizer(lr=0.1)
|
||||||
|
net.step(batch[:, :784], batch[:, 784:], opt)
|
||||||
|
|
||||||
|
|
||||||
|
cdef public float eval_net(
|
||||||
|
object net
|
||||||
|
):
|
||||||
|
return net.evaluate(X_test, y_test, 'cls')
|
||||||
|
|
||||||
|
|
||||||
|
cdef public np.ndarray[np.float32_t, ndim=2, mode='c'] mnist_batch(
|
||||||
|
Py_ssize_t bs
|
||||||
|
):
|
||||||
|
idx = np.random.choice(len(X_train), bs, replace=False)
|
||||||
|
arr = np.concatenate([X_train[idx], y_train[idx]], axis=1)
|
||||||
|
return arr
|
||||||
|
|
||||||
|
cdef public float arrsum(
|
||||||
|
np.ndarray[np.float32_t, ndim=2, mode='c'] a
|
||||||
|
):
|
||||||
|
return np.sum(a)
|
||||||
89
main.c
Normal file
89
main.c
Normal file
@@ -0,0 +1,89 @@
|
|||||||
|
#include <Python.h>
|
||||||
|
#include <stdio.h>
|
||||||
|
#include <mpi.h>
|
||||||
|
|
||||||
|
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
|
||||||
|
#include <numpy/arrayobject.h>
|
||||||
|
|
||||||
|
#include "library.h"
|
||||||
|
|
||||||
|
#define P_READER 0
|
||||||
|
#define P_SLAVE 1
|
||||||
|
#define P_MASTER 2
|
||||||
|
|
||||||
|
#define COMM 100
|
||||||
|
#define ITER 20
|
||||||
|
#define BS 50
|
||||||
|
|
||||||
|
// Reads some data and converts it to 2D float array
|
||||||
|
void data_reader() {
|
||||||
|
while (1) {
|
||||||
|
PyArrayObject* batch = mnist_batch(10);
|
||||||
|
|
||||||
|
long* shape = PyArray_SHAPE(batch);
|
||||||
|
MPI_Send(shape, 2, MPI_LONG, P_SLAVE, 0, MPI_COMM_WORLD);
|
||||||
|
MPI_Send(PyArray_DATA(batch), PyArray_SIZE(batch), MPI_FLOAT,
|
||||||
|
P_SLAVE, 0, MPI_COMM_WORLD);
|
||||||
|
Py_DECREF(batch);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
// Receives weight updates and trains, sends learned weights back to master
|
||||||
|
void slave_node() {
|
||||||
|
PyObject* net = create_network();
|
||||||
|
for (int i = 0; i < COMM; i++) {
|
||||||
|
char go;
|
||||||
|
MPI_Recv(&go, 1, MPI_CHAR, P_MASTER, MPI_ANY_TAG, MPI_COMM_WORLD,
|
||||||
|
MPI_STATUS_IGNORE);
|
||||||
|
for (int k = 0; k < ITER; k++) {
|
||||||
|
long shape[2];
|
||||||
|
MPI_Recv(shape, 2, MPI_LONG, P_READER, MPI_ANY_TAG, MPI_COMM_WORLD,
|
||||||
|
MPI_STATUS_IGNORE);
|
||||||
|
long size = shape[0] * shape[1];
|
||||||
|
float* data = malloc(shape[0] * shape[1] * sizeof(float));
|
||||||
|
MPI_Recv(data, size, MPI_FLOAT, P_READER, MPI_ANY_TAG,
|
||||||
|
MPI_COMM_WORLD, MPI_STATUS_IGNORE);
|
||||||
|
PyArrayObject* batch = PyArray_SimpleNewFromData(
|
||||||
|
2, shape, NPY_FLOAT32, data);
|
||||||
|
step_net(net, batch);
|
||||||
|
}
|
||||||
|
printf("%f\n", eval_net(net));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
// Stores most up-to-date model, sends it to slaves for training
|
||||||
|
void master_node() {
|
||||||
|
for (int i = 0; i < COMM; i++) {
|
||||||
|
char go;
|
||||||
|
MPI_Send(&go, 1, MPI_CHAR, P_SLAVE, 0, MPI_COMM_WORLD);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
int main (int argc, const char **argv) {
|
||||||
|
int node;
|
||||||
|
MPI_Init(NULL, NULL);
|
||||||
|
MPI_Comm_rank(MPI_COMM_WORLD, &node);
|
||||||
|
|
||||||
|
// Cython Boilerplate
|
||||||
|
PyImport_AppendInittab("library", PyInit_library);
|
||||||
|
Py_Initialize();
|
||||||
|
import_array();
|
||||||
|
PyRun_SimpleString("import sys\nsys.path.insert(0,'')");
|
||||||
|
PyObject* library_module = PyImport_ImportModule("library");
|
||||||
|
|
||||||
|
// Actual Code
|
||||||
|
if (node == 0) {
|
||||||
|
data_reader();
|
||||||
|
}
|
||||||
|
else if (node == 1) {
|
||||||
|
slave_node();
|
||||||
|
}
|
||||||
|
else if (node == 2) {
|
||||||
|
master_node();
|
||||||
|
}
|
||||||
|
|
||||||
|
// Cython Finalizing Boilerplate
|
||||||
|
Py_DECREF(library_module);
|
||||||
|
Py_Finalize();
|
||||||
|
MPI_Finalize();
|
||||||
|
}
|
||||||
Reference in New Issue
Block a user