it started working so commit it

This commit is contained in:
2019-11-24 22:14:26 -08:00
commit a80a3de4fa
4 changed files with 187 additions and 0 deletions

7
.gitignore vendored Normal file
View File

@@ -0,0 +1,7 @@
.*.sw?
DS_Store
library.c
library.h
run
compile_commands.json
build/

19
CMakeLists.txt Normal file
View File

@@ -0,0 +1,19 @@
cmake_minimum_required(VERSION 3.5)
project(fedavg_mpi)
find_package(MPI REQUIRED)
find_package(Python3 COMPONENTS Development NumPy)
add_executable(${PROJECT_NAME} main.c library.c)
target_include_directories(${PROJECT_NAME} PRIVATE ${Python3_INCLUDE_DIRS})
target_include_directories(${PROJECT_NAME} PRIVATE ${Python3_NumPy_INCLUDE_DIRS})
target_include_directories(${PROJECT_NAME} PRIVATE ${CMAKE_CURRENT_SOURCE_DIR})
target_link_libraries(${PROJECT_NAME} ${Python3_LIBRARIES})
target_link_libraries(${PROJECT_NAME} ${MPI_C_LIBRARIES})
target_compile_options(${PROJECT_NAME} PRIVATE -Wall -g -std=c99)
add_compile_definitions(NPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION)
set(CMAKE_EXPORT_COMPILE_COMMANDS on)

72
library.pyx Normal file
View File

@@ -0,0 +1,72 @@
cimport numpy as np
import numpy as np
import mynet as mn
ctr = []
X_train, y_train, X_test, y_test = mn.load_mnist()
cdef public char * greeting():
return f'The value is {3**3**3}'.encode('utf-8')
cdef public void debug_print(object o):
print(o.flags)
# print(o)
cdef public np.ndarray[np.float32_t, ndim=2, mode='c'] dot(
np.ndarray[np.float32_t, ndim=2, mode='c'] x,
np.ndarray[np.float32_t, ndim=2, mode='c'] y
):
return x @ y
cdef public np.ndarray[np.float32_t, ndim=2, mode='c'] predict(
object net,
np.ndarray[np.float32_t, ndim=2, mode='c'] X
):
try:
return net(X)
except Exception as e:
print(e)
cdef public object create_network():
return mn.Network((784, 10), mn.relu, mn.sigmoid, mn.bin_x_entropy)
cdef public object combo_net(list nets):
return mn.combo_net(nets)
cdef public object make_like(object neta, object netb):
netb.be_like(neta)
cdef public void step_net(
object net,
np.ndarray[np.float32_t, ndim=2, mode='c'] batch
):
opt = mn.SGDOptimizer(lr=0.1)
net.step(batch[:, :784], batch[:, 784:], opt)
cdef public float eval_net(
object net
):
return net.evaluate(X_test, y_test, 'cls')
cdef public np.ndarray[np.float32_t, ndim=2, mode='c'] mnist_batch(
Py_ssize_t bs
):
idx = np.random.choice(len(X_train), bs, replace=False)
arr = np.concatenate([X_train[idx], y_train[idx]], axis=1)
return arr
cdef public float arrsum(
np.ndarray[np.float32_t, ndim=2, mode='c'] a
):
return np.sum(a)

89
main.c Normal file
View File

@@ -0,0 +1,89 @@
#include <Python.h>
#include <stdio.h>
#include <mpi.h>
#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
#include <numpy/arrayobject.h>
#include "library.h"
#define P_READER 0
#define P_SLAVE 1
#define P_MASTER 2
#define COMM 100
#define ITER 20
#define BS 50
// Reads some data and converts it to 2D float array
void data_reader() {
while (1) {
PyArrayObject* batch = mnist_batch(10);
long* shape = PyArray_SHAPE(batch);
MPI_Send(shape, 2, MPI_LONG, P_SLAVE, 0, MPI_COMM_WORLD);
MPI_Send(PyArray_DATA(batch), PyArray_SIZE(batch), MPI_FLOAT,
P_SLAVE, 0, MPI_COMM_WORLD);
Py_DECREF(batch);
}
}
// Receives weight updates and trains, sends learned weights back to master
void slave_node() {
PyObject* net = create_network();
for (int i = 0; i < COMM; i++) {
char go;
MPI_Recv(&go, 1, MPI_CHAR, P_MASTER, MPI_ANY_TAG, MPI_COMM_WORLD,
MPI_STATUS_IGNORE);
for (int k = 0; k < ITER; k++) {
long shape[2];
MPI_Recv(shape, 2, MPI_LONG, P_READER, MPI_ANY_TAG, MPI_COMM_WORLD,
MPI_STATUS_IGNORE);
long size = shape[0] * shape[1];
float* data = malloc(shape[0] * shape[1] * sizeof(float));
MPI_Recv(data, size, MPI_FLOAT, P_READER, MPI_ANY_TAG,
MPI_COMM_WORLD, MPI_STATUS_IGNORE);
PyArrayObject* batch = PyArray_SimpleNewFromData(
2, shape, NPY_FLOAT32, data);
step_net(net, batch);
}
printf("%f\n", eval_net(net));
}
}
// Stores most up-to-date model, sends it to slaves for training
void master_node() {
for (int i = 0; i < COMM; i++) {
char go;
MPI_Send(&go, 1, MPI_CHAR, P_SLAVE, 0, MPI_COMM_WORLD);
}
}
int main (int argc, const char **argv) {
int node;
MPI_Init(NULL, NULL);
MPI_Comm_rank(MPI_COMM_WORLD, &node);
// Cython Boilerplate
PyImport_AppendInittab("library", PyInit_library);
Py_Initialize();
import_array();
PyRun_SimpleString("import sys\nsys.path.insert(0,'')");
PyObject* library_module = PyImport_ImportModule("library");
// Actual Code
if (node == 0) {
data_reader();
}
else if (node == 1) {
slave_node();
}
else if (node == 2) {
master_node();
}
// Cython Finalizing Boilerplate
Py_DECREF(library_module);
Py_Finalize();
MPI_Finalize();
}